If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ), 'gf_id' => 'HOM05D000874', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000874' ), 'data_identifier' => 'HOM05D000874', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000874', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '682', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p36670' => 'bna', 'A04p28040' => 'bna', 'A08p30310' => 'bna', 'A09p04120' => 'bna', 'Aa31LG11G2330' => 'aar', 'Aa31LG2G3850' => 'aar', 'Aa31LG5G21760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.4541' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1138' => 'aag', 'Actinidia04813' => 'ach', 'Actinidia04814' => 'ach', 'Actinidia04815' => 'ach', 'Actinidia11325' => 'ach', 'Actinidia16135' => 'ach', 'Actinidia16136' => 'ach', 'Actinidia16137' => 'ach', 'Actinidia16138' => 'ach', 'Actinidia16139' => 'ach', 'Actinidia16140' => 'ach', 'Actinidia16141' => 'ach', 'Actinidia17590' => 'ach', 'Actinidia18981' => 'ach', 'Actinidia18982' => 'ach', 'Actinidia18983' => 'ach', 'Actinidia35043' => 'ach', 'Actinidia38430' => 'ach', 'Ah.02g114140' => 'amhyb', 'Ah.08g211030' => 'amhyb', 'Ah.13g073700' => 'amhyb', 'AL4G32720' => 'aly', 'AL5G15820' => 'aly', 'AL5G20130' => 'aly', 'AL7G26780' => 'aly', 'Aqoxy3G03671' => 'aox', 'Aqoxy3G03673' => 'aox', 'Aqoxy4G02908' => 'aox', 'arahy.Tifrunner.gnm1.ann1.87W1E2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A58RJ7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D19DHE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GR9NQC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J7EB43' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NPQ6GC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V07LAM' => 'arhy', 'AT2G36540' => 'ath', 'AT2G36550' => 'ath', 'AT3G26850' => 'ath', 'AT3G29760' => 'ath', 'AT4G26190' => 'ath', 'ATR0177G002' => 'atr', 'ATR0177G003' => 'atr', 'ATR0177G006' => 'atr', 'ATR0177G060' => 'atr', 'Atru.chr3.2653' => 'acertr', 'Atru.chr8.1656' => 'acertr', 'Atru.chr8.1657' => 'acertr', 'Atru.chr8.1658' => 'acertr', 'Atru.chr8.481' => 'acertr', 'Atru.chr9.525' => 'acertr', 'Atru.chr9.526' => 'acertr', 'Atru.chr9.537' => 'acertr', 'AUR62008554' => 'cqu', 'AUR62008555' => 'cqu', 'AUR62021535' => 'cqu', 'AUR62021537' => 'cqu', 'AUR62030089' => 'cqu', 'AUR62033594' => 'cqu', 'AUR62033596' => 'cqu', 'AUR62037887' => 'cqu', 'AUR62037888' => 'cqu', 'AUR62038217' => 'cqu', 'AUR62039645' => 'cqu', 'AUR62039646' => 'cqu', 'AUR62039647' => 'cqu', 'AUR62039648' => 'cqu', 'AUR62039649' => 'cqu', 'AUR62039650' => 'cqu', 'BcaB02g09347' => 'bca', 'BcaB04g19518' => 'bca', 'BcaB05g22968' => 'bca', 'BcaB06g26889' => 'bca', 'BcaB06g26898' => 'bca', 'BcaB06g26903' => 'bca', 'BcaB06g28953' => 'bca', 'BcaC02g07585' => 'bca', 'BcaC02g11772' => 'bca', 'BcaC03g17583' => 'bca', 'BcaC04g23833' => 'bca', 'BcaC07g38927' => 'bca', 'BcaC07g38928' => 'bca', 'BcaC07g38929' => 'bca', 'BcaC07g38930' => 'bca', 'BolC2t11621H' => 'bol', 'BolC4t22804H' => 'bol', 'BolC4t28033H' => 'bol', 'BolC8t49504H' => 'bol', 'BolC9t53365H' => 'bol', 'BraA02t08662Z' => 'bra', 'BraA04t18291Z' => 'bra', 'BraA05t19883Z' => 'bra', 'BraA08t34964Z' => 'bra', 'BraA09t36048Z' => 'bra', 'C04p11550' => 'bna', 'C04p11560' => 'bna', 'C04p65440' => 'bna', 'C04p65450' => 'bna', 'C08p18780' => 'bna', 'C09p04330' => 'bna', 'CAN.G1228.13' => 'can', 'CAN.G587.50' => 'can', 'CAN.G587.51' => 'can', 'CAN.G587.53' => 'can', 'CAN.G824.44' => 'can', 'CAN.G93.56' => 'can', 'CANSAT11G1724' => 'cansat', 'CANSAT64G0133' => 'cansat', 'CANSAT80G1925' => 'cansat', 'CARHR130830' => 'chi', 'CARHR130840' => 'chi', 'CARHR147920' => 'chi', 'CARHR153160' => 'chi', 'CARHR233720' => 'chi', 'CARHR233730' => 'chi', 'Carub.0004s1834' => 'cru', 'Carub.0004s1835' => 'cru', 'Carub.0005s0496' => 'cru', 'Carub.0005s0832' => 'cru', 'Carub.0007s1476' => 'cru', 'Ca_02921_v3' => 'car', 'Ca_02923_v3' => 'car', 'Ca_13746_v3' => 'car', 'CBR_g37879' => 'cbr', 'CBR_g37886' => 'cbr', 'CBR_g40213' => 'cbr', 'CBR_g40214' => 'cbr', 'CBR_g46399' => 'cbr', 'CBR_g54065' => 'cbr', 'Cc00_g03500' => 'ccan', 'Cc00_g03520' => 'ccan', 'Cc00_g07060' => 'ccan', 'Cc00_g23250' => 'ccan', 'Cc00_g35250' => 'ccan', 'Cc02_g28410' => 'ccan', 'Cc02_g31400' => 'ccan', 'Cc02_g38660' => 'ccan', 'Cc03_g08740' => 'ccan', 'Cc06_g05100' => 'ccan', 'Cc07_g04330' => 'ccan', 'Cc07_g19840' => 'ccan', 'Cc07_g20960' => 'ccan', 'Cc08_g06550' => 'ccan', 'Cc08_g08840' => 'ccan', 'Cc09_g07860' => 'ccan', 'CDE04G3564' => 'cde', 'CDE07G0830' => 'cde', 'CDE08G0775' => 'cde', 'CDE08G1099' => 'cde', 'CDE10G0367' => 'cde', 'Cfa007680' => 'cfa', 'Cfa016521' => 'cfa', 'Cfa016522' => 'cfa', 'Cfa016523' => 'cfa', 'Cfa019352' => 'cfa', 'Cfa020998' => 'cfa', 'Ciclev10013325m.g' => 'ccl', 'Ciclev10013406m.g' => 'ccl', 'Ciclev10013817m.g' => 'ccl', 'Ciclev10018493m.g' => 'ccl', 'Ciclev10018923m.g' => 'ccl', 'CiPaw.03G087800' => 'cil', 'CiPaw.10G004500' => 'cil', 'CiPaw.11G055200' => 'cil', 'CiPaw.11G055300' => 'cil', 'CiPaw.11G055400' => 'cil', 'ClCG04G009700' => 'cla', 'ClCG04G011690' => 'cla', 'ClCG06G015550' => 'cla', 'ClCG06G015560' => 'cla', 'ClCG07G016520' => 'cla', 'COL.COLO4_24322' => 'col', 'COL.COLO4_24323' => 'col', 'COL.COLO4_29833' => 'col', 'COL.COLO4_37968' => 'col', 'COL.COLO4_37969' => 'col', 'Cpa.g.sc14.191' => 'cpa', 'Cpa.g.sc5.90' => 'cpa', 'Cpa.g.sc5.91' => 'cpa', 'Cpa.g.sc5.93' => 'cpa', 'Cpa.g.sc67.23' => 'cpa', 'Cpa.g.sc94.66' => 'cpa', 'Cpa.g.sc94.69' => 'cpa', 'Cpa.g.sc94.70' => 'cpa', 'Cpa.g.sc94.72' => 'cpa', 'Cre01.g003450' => 'cre', 'CsaV3_1G003030' => 'csa', 'CsaV3_1G003050' => 'csa', 'CsaV3_1G006090' => 'csa', 'CsaV3_4G010290' => 'csa', 'CsaV3_6G040360' => 'csa', 'CSS0021526' => 'camsi', 'CSS0023285' => 'camsi', 'CSS0023333' => 'camsi', 'CSS0036101' => 'camsi', 'CSS0038008' => 'camsi', 'CSS0038877' => 'camsi', 'CSS0039968' => 'camsi', 'CSS0041911' => 'camsi', 'DCAR_010160' => 'dca', 'DCAR_011105' => 'dca', 'DCAR_013957' => 'dca', 'DCAR_017349' => 'dca', 'DCAR_023163' => 'dca', 'DCAR_023164' => 'dca', 'DCAR_023166' => 'dca', 'DCAR_025440' => 'dca', 'Dinv17430' => 'din', 'Dinv19816' => 'din', 'Dinv19817' => 'din', 'Dinv22768' => 'din', 'Dinv34933' => 'din', 'Duzib068G0415' => 'dzi', 'Duzib147G0129' => 'dzi', 'Duzib205G0866' => 'dzi', 'Duzib205G1421' => 'dzi', 'ECA232G1458' => 'eca', 'ECA232G4798' => 'eca', 'ECA246G3190' => 'eca', 'ECA246G4580' => 'eca', 'ECA247G2112' => 'eca', 'ECA248G1348' => 'eca', 'ECA248G2582' => 'eca', 'EL10Ac3g06049' => 'bvu', 'EL10Ac5g11156' => 'bvu', 'EL10Ac5g11157' => 'bvu', 'EL10Ac7g17010' => 'bvu', 'EL10Ac7g17013' => 'bvu', 'Eucgr.B00611' => 'egr', 'Eucgr.B00612' => 'egr', 'Eucgr.B00613' => 'egr', 'Eucgr.B00614' => 'egr', 'Eucgr.J01384' => 'egr', 'FAN02G0261' => 'fan', 'FAN02G1313' => 'fan', 'FAN02G1610' => 'fan', 'FAN02G2438' => 'fan', 'FAN02G4103' => 'fan', 'FAN05G0832' => 'fan', 'FAN05G1754' => 'fan', 'FAN05G3328' => 'fan', 'FAN05G3374' => 'fan', 'FAN05G3737' => 'fan', 'FAN05G5454' => 'fan', 'FAN07G1437' => 'fan', 'FAN08G0155' => 'fan', 'FAN09G0433' => 'fan', 'FAN09G2215' => 'fan', 'FAN09G2693' => 'fan', 'FAN09G3505' => 'fan', 'FAN13G1125' => 'fan', 'FAN14G1882' => 'fan', 'FAN14G2137' => 'fan', 'FAN14G2202' => 'fan', 'FAN14G2556' => 'fan', 'FAN14G2900' => 'fan', 'FAN14G4813' => 'fan', 'FAN18G0264' => 'fan', 'FvH4_5g13670' => 'fve', 'FvH4_5g13671' => 'fve', 'FvH4_6g17640' => 'fve', 'FvH4_6g17650' => 'fve', 'FvH4_6g17680' => 'fve', 'FvH4_6g17690' => 'fve', 'FvH4_6g18040' => 'fve', 'FvH4_6g18041' => 'fve', 'FvH4_6g46700' => 'fve', 'Glyma.04G160800' => 'gma', 'Glyma.04G160900' => 'gma', 'Glyma.06G204500' => 'gma', 'Glyma.06G204600' => 'gma', 'Glyma.13G055600' => 'gma', 'Glyma.18G269100' => 'gma', 'Glyma.19G031600' => 'gma', 'Glyma.19G190500' => 'gma', 'Gohir.A03G070700' => 'ghi', 'Gohir.A07G067700' => 'ghi', 'Gohir.A09G008700' => 'ghi', 'Gohir.A11G061000' => 'ghi', 'Gohir.D03G097100' => 'ghi', 'Gohir.D07G072300' => 'ghi', 'Gohir.D09G008000' => 'ghi', 'Gohir.D11G065100' => 'ghi', 'Gorai.001G076500' => 'gra', 'Gorai.003G101900' => 'gra', 'Gorai.006G009600' => 'gra', 'Gorai.007G070300' => 'gra', 'GSVIVG01008112001' => 'vvi', 'GSVIVG01008114001' => 'vvi', 'GSVIVG01032915001' => 'vvi', 'GSVIVG01033766001' => 'vvi', 'HanXRQChr01g0028361' => 'han', 'HanXRQChr01g0028371' => 'han', 'HanXRQChr01g0028381' => 'han', 'HanXRQChr02g0041441' => 'han', 'HanXRQChr03g0072201' => 'han', 'HanXRQChr08g0230421' => 'han', 'HanXRQChr11g0351071' => 'han', 'HanXRQChr11g0351081' => 'han', 'HanXRQChr11g0351091' => 'han', 'HanXRQChr12g0367811' => 'han', 'HanXRQChr15g0470491' => 'han', 'HanXRQChr16g0521711' => 'han', 'HanXRQChr16g0521781' => 'han', 'HanXRQChr16g0521841' => 'han', 'HanXRQChr16g0522161' => 'han', 'Haze_07743' => 'cav', 'Haze_07744' => 'cav', 'Haze_14418' => 'cav', 'Haze_19522' => 'cav', 'Haze_19523' => 'cav', 'Hma1.2p1_0060F.1_g032960' => 'hma', 'Hma1.2p1_0060F.1_g032970' => 'hma', 'HPP92_007834' => 'vpl', 'HPP92_014193' => 'vpl', 'HPP92_019467' => 'vpl', 'HPP92_020452' => 'vpl', 'HPP92_020982' => 'vpl', 'HPP92_026449' => 'vpl', 'Hund02573' => 'sun', 'Hund30138' => 'sun', 'Hund30139' => 'sun', 'Hund30250' => 'sun', 'Hund30251' => 'sun', 'Lalb_Chr02g0158871' => 'lal', 'Lalb_Chr05g0229601' => 'lal', 'Lalb_Chr11g0071721' => 'lal', 'Lalb_Chr16g0391651' => 'lal', 'Lalb_Chr16g0391661' => 'lal', 'Lalb_Chr20g0112271' => 'lal', 'Lj1g0019370' => 'lja', 'Lj1g0022559' => 'lja', 'Lj1g0025338' => 'lja', 'Lj1g0025553' => 'lja', 'Lj2A127G88' => 'lonja', 'Lj2g0001190' => 'lja', 'Lj2g0001379' => 'lja', 'Lj5A134T72' => 'lonja', 'Lj5P134T60' => 'lonja', 'Lju41C2T8' => 'lonja', 'Lsat_1_v5_gn_1_14680' => 'lsa', 'Lsat_1_v5_gn_1_50460' => 'lsa', 'Lsat_1_v5_gn_1_50480' => 'lsa', 'Lsat_1_v5_gn_1_50520' => 'lsa', 'Lsat_1_v5_gn_3_73441' => 'lsa', 'Lsat_1_v5_gn_3_96140' => 'lsa', 'Lsat_1_v5_gn_4_172061' => 'lsa', 'Lsat_1_v5_gn_5_23020' => 'lsa', 'Manes.02G056200' => 'mes', 'Manes.04G074331' => 'mes', 'Manes.06G083000' => 'mes', 'Manes.06G083200' => 'mes', 'Manes.09G060716' => 'mes', 'Manes.14G086700' => 'mes', 'Manes.14G086800' => 'mes', 'Mapoly0027s0138' => 'mpo', 'Mapoly0035s0128' => 'mpo', 'Mapoly0158s0001' => 'mpo', 'MBI01_g14099_MAGBIO' => 'mbi', 'MBI01_g14100_MAGBIO' => 'mbi', 'MBI01_g14106_MAGBIO' => 'mbi', 'MCO02G213' => 'mco', 'MCO04G411' => 'mco', 'MD06G1203100' => 'mdo', 'MD09G1068500' => 'mdo', 'MD14G1013900' => 'mdo', 'MD14G1014000' => 'mdo', 'MD14G1014100' => 'mdo', 'MD14G1213100' => 'mdo', 'MD14G1213700' => 'mdo', 'MD17G1061400' => 'mdo', 'Medtr2g060650' => 'mtr', 'Medtr2g060670' => 'mtr', 'Medtr7g015130' => 'mtr', 'Medtr7g015150' => 'mtr', 'Medtr7g015170' => 'mtr', 'Medtr7g015180' => 'mtr', 'Medtr7g015190' => 'mtr', 'Medtr7g103410' => 'mtr', 'Medtr7g103540' => 'mtr', 'Medtr7g103550' => 'mtr', 'Medtr7g103560' => 'mtr', 'Medtr7g103570' => 'mtr', 'MELO3C002040.2' => 'cme', 'MELO3C017233.2' => 'cme', 'MELO3C017234.2' => 'cme', 'MELO3C017235.2' => 'cme', 'MELO3C024511.2' => 'cme', 'MELO3C032452.2' => 'cme', 'Migut.D01628' => 'egut', 'Migut.H00613' => 'egut', 'Migut.I00513' => 'egut', 'Migut.K00812' => 'egut', 'Migut.L01749' => 'egut', 'MSTRG.22953' => 'ama', 'MSTRG.23878' => 'ama', 'MSTRG.26656' => 'ama', 'MSTRG.4486' => 'ama', 'Nitab4.5_0000212g0290' => 'nta', 'Nitab4.5_0001328g0070' => 'nta', 'Nitab4.5_0001328g0080' => 'nta', 'Nitab4.5_0001922g0080' => 'nta', 'Nitab4.5_0001922g0100' => 'nta', 'Nitab4.5_0003932g0040' => 'nta', 'Nitab4.5_0007645g0010' => 'nta', 'Nitab4.5_0007645g0020' => 'nta', 'Nitab4.5_0007645g0030' => 'nta', 'Nitab4.5_0010125g0010' => 'nta', 'Nn3g17472' => 'nnu', 'Nn3g17474' => 'nnu', 'Nn3g17475' => 'nnu', 'Nn4g23457' => 'nnu', 'Nn4g23458' => 'nnu', 'Nn6g31583' => 'nnu', 'Nn6g31584' => 'nnu', 'Nn6g31585' => 'nnu', 'Nn6g35077' => 'nnu', 'Oeu017180.1' => 'oeu', 'Oeu017181.1' => 'oeu', 'Oeu023847.1' => 'oeu', 'Oeu023851.2' => 'oeu', 'Oeu025532.3' => 'oeu', 'Oeu025533.1' => 'oeu', 'Oeu040546.1' => 'oeu', 'Oeu040547.1' => 'oeu', 'Oeu040548.1' => 'oeu', 'Oeu046715.1' => 'oeu', 'Oeu057196.3' => 'oeu', 'Oeu062169.2' => 'oeu', 'Os03g0214900' => 'osa', 'Os03g0755600' => 'osa', 'Os03g0755800' => 'osa', 'Os07g0109300' => 'osa', 'Peaxi162Scf00013g00075' => 'pax', 'Peaxi162Scf00013g00734' => 'pax', 'Peaxi162Scf00201g00344' => 'pax', 'Peaxi162Scf00412g00713' => 'pax', 'Peaxi162Scf00991g00016' => 'pax', 'Peaxi162Scf00991g00113' => 'pax', 'PGR042G1772' => 'pgr', 'PGR042G3717' => 'pgr', 'PGR083G2399' => 'pgr', 'PGSC0003DMG400024534' => 'stu', 'PGSC0003DMG400026552' => 'stu', 'PGSC0003DMG401002685' => 'stu', 'PGSC0003DMG401004066' => 'stu', 'PGSC0003DMG402002685' => 'stu', 'PGSC0003DMG402004066' => 'stu', 'Phvul.003G026400' => 'pvu', 'Phvul.004G037900' => 'pvu', 'Phvul.008G031500' => 'pvu', 'Phvul.009G202400' => 'pvu', 'Phvul.009G202700' => 'pvu', 'Potri.004G116400' => 'ptr', 'Potri.006G227200' => 'ptr', 'Potri.010G244200' => 'ptr', 'Potri.010G244400' => 'ptr', 'Potri.015G059000' => 'ptr', 'Potri.018G051900' => 'ptr', 'Pp3c12_4860' => 'ppa', 'Pp3c21_5480' => 'ppa', 'Pp3c21_5570' => 'ppa', 'Pp3c4_15980' => 'ppa', 'Pp3c8_24140' => 'ppa', 'Prupe.3G252300' => 'ppe', 'Prupe.5G206600' => 'ppe', 'Prupe.5G206700' => 'ppe', 'Prupe.7G119400' => 'ppe', 'Prupe.7G119500' => 'ppe', 'Psat0s3273g0040' => 'psa', 'Psat0s4383g0040' => 'psa', 'Psat1g126480' => 'psa', 'Psat3g036200' => 'psa', 'Psat3g036280' => 'psa', 'Psat3g202960' => 'psa', 'Psat3g203000' => 'psa', 'Psat3g203040' => 'psa', 'Psat4g051080' => 'psa', 'PSO017G1675' => 'pso', 'PSO017G2036' => 'pso', 'PSO063G1181' => 'pso', 'PSO063G3153' => 'pso', 'PSO063G7126' => 'pso', 'PSO339G4599' => 'pso', 'PSO648G0103' => 'pso', 'QL02p067387' => 'qlo', 'QL07p040759' => 'qlo', 'QL10p019915' => 'qlo', 'QL10p019931' => 'qlo', 'QL93p0356_0092' => 'qlo', 'RcHm_v2.0_Chr1g0330571' => 'rch', 'RcHm_v2.0_Chr1g0330581' => 'rch', 'RcHm_v2.0_Chr1g0330841' => 'rch', 'RcHm_v2.0_Chr2g0165581' => 'rch', 'RcHm_v2.0_Chr3g0471881' => 'rch', 'RcHm_v2.0_Chr3g0471901' => 'rch', 'RcHm_v2.0_Chr3g0472301' => 'rch', 'RcHm_v2.0_Chr3g0472311' => 'rch', 'RcHm_v2.0_Chr4g0442541' => 'rch', 'RcHm_v2.0_Chr7g0183261' => 'rch', 'RcHm_v2.0_Chr7g0183271' => 'rch', 'RcHm_v2.0_Chr7g0183291' => 'rch', 'Rhsim03G0082400' => 'rsi', 'Rhsim03G0082500' => 'rsi', 'Rhsim08G0075500' => 'rsi', 'Rhsim08G0144400' => 'rsi', 'Rhsim08G0144600' => 'rsi', 'RhsimUnG0020400' => 'rsi', 'Sabra04G0070000' => 'sbr', 'Sabra06G0175800' => 'sbr', 'Sabra07G0057900' => 'sbr', 'Sabra10G0190900' => 'sbr', 'Sabra15G0084600' => 'sbr', 'Sabra15G0084700' => 'sbr', 'Sabra17G0066500' => 'sbr', 'Sabra18G0048000' => 'sbr', 'SalBow1G1354' => 'sbo', 'SalBow1G1712' => 'sbo', 'SalBow1G4387' => 'sbo', 'SalBow5G5238' => 'sbo', 'SalBow7G4461' => 'sbo', 'Sc10g0009680' => 'sci', 'Sc12g0007060' => 'sci', 'Sc14g0006370' => 'sci', 'Sed0001058' => 'sed', 'Sed0005310' => 'sed', 'Sed0009455' => 'sed', 'Sed0013303' => 'sed', 'Sed0014942' => 'sed', 'Sed0015907' => 'sed', 'Sed0022918' => 'sed', 'Sed0024499' => 'sed', 'SEGI_03195' => 'sgi', 'SEGI_09522' => 'sgi', 'SEGI_15515' => 'sgi', 'SEGI_24030' => 'sgi', 'SEGI_29202' => 'sgi', 'SEGI_35425' => 'sgi', 'SEGI_35726' => 'sgi', 'SGA_v2.0_scaffold184G39911' => 'sas', 'SGA_v2.0_scaffold184G39919' => 'sas', 'SGA_v2.0_scaffold28G11741' => 'sas', 'SGA_v2.0_scaffold42G16040' => 'sas', 'SGA_v2.0_scaffold4G02371' => 'sas', 'SMO176G0008' => 'smo', 'SMO238G0024' => 'smo', 'SMO353G0398' => 'smo', 'Solyc02g065790.3' => 'sly', 'Solyc03g114990.2' => 'sly', 'Solyc06g069440.3' => 'sly', 'Solyc06g069450.4' => 'sly', 'Solyc09g008950.1' => 'sly', 'Solyc09g008960.2' => 'sly', 'Sopen02g016030' => 'spe', 'Sopen03g034060' => 'spe', 'Sopen06g026730' => 'spe', 'Sopen06g026740' => 'spe', 'Sopen09g003720' => 'spe', 'Sp1g30480' => 'spa', 'Sp1g30490' => 'spa', 'Sp2g18040' => 'spa', 'Sp2g24270' => 'spa', 'Sp4g18830' => 'spa', 'Sp4g18840' => 'spa', 'Sp7g05270' => 'spa', 'TAR369G0064' => 'tar', 'TAR369G0434' => 'tar', 'TAR369G0865' => 'tar', 'TAR369G1004' => 'tar', 'TAR371G0581' => 'tar', 'TAR371G0757' => 'tar', 'TAR622G0252' => 'tar', 'TAR622G0439' => 'tar', 'TAR622G0856' => 'tar', 'TAR622G1025' => 'tar', 'TAR622G1445' => 'tar', 'TAR629G0122' => 'tar', 'TAR629G0267' => 'tar', 'TAR629G1603' => 'tar', 'TAR629G2811' => 'tar', 'TAR629G2997' => 'tar', 'TAR629G3315' => 'tar', 'THA.LOC104801117' => 'tha', 'THA.LOC104805516' => 'tha', 'THA.LOC104812110' => 'tha', 'THA.LOC104823468' => 'tha', 'THA.LOC104823469' => 'tha', 'Thecc.03G104200' => 'tca', 'Thecc.03G104300' => 'tca', 'Thecc.04G097500' => 'tca', 'Thecc.05G079800' => 'tca', 'Thecc.05G134800' => 'tca', 'Thhalv10004387m.g' => 'esa', 'Thhalv10004428m.g' => 'esa', 'Thhalv10012333m.g' => 'esa', 'Thhalv10012375m.g' => 'esa', 'Thhalv10027102m.g' => 'esa', 'Thhalv10027825m.g' => 'esa', 'Thhalv10028320m.g' => 'esa', 'TPR.G14365' => 'tpr', 'TPR.G26218' => 'tpr', 'TPR.G28361' => 'tpr', 'TPR.G31312' => 'tpr', 'TPR.G32159' => 'tpr', 'TPR.G32166' => 'tpr', 'TPR.G33414' => 'tpr', 'TPR.G33468' => 'tpr', 'TPR.G33478' => 'tpr', 'TPR.G35004' => 'tpr', 'TPR.G35038' => 'tpr', 'TPR.G36133' => 'tpr', 'TPR.G36190' => 'tpr', 'TPR.G40445' => 'tpr', 'TPR.G5173' => 'tpr', 'TPR.G7021' => 'tpr', 'TPR.G7022' => 'tpr', 'TWI09G0140' => 'twi', 'TWI32G0665' => 'twi', 'TWI53G0240' => 'twi', 'TWI53G1141' => 'twi', 'TWI60G0797' => 'twi', 'TWI60G0966' => 'twi', 'TWI60G1333' => 'twi', 'TWI60G1583' => 'twi', 'TWI81G1023' => 'twi', 'unitig_0.g1653' => 'ugi', 'unitig_0.g1772' => 'ugi', 'unitig_0.g1907' => 'ugi', 'unitig_0.g1992' => 'ugi', 'unitig_0.g606' => 'ugi', 'unitig_14.g30635' => 'ugi', 'unitig_21.g20469' => 'ugi', 'unitig_22.g5784' => 'ugi', 'unitig_22.g5887' => 'ugi', 'unitig_26.g10599' => 'ugi', 'unitig_26.g9669' => 'ugi', 'unitig_32.g11119' => 'ugi', 'unitig_32.g11769' => 'ugi', 'unitig_46.g17894' => 'ugi', 'unitig_46.g18052' => 'ugi', 'unitig_578.g15831' => 'ugi', 'unitig_578.g15832' => 'ugi', 'unitig_578.g15838' => 'ugi', 'unitig_62.g23032' => 'ugi', 'unitig_62.g23099' => 'ugi', 'unitig_699.g19103' => 'ugi', 'unitig_736.g22969' => 'ugi', 'unitig_748.g7507' => 'ugi', 'unitig_748.g7684' => 'ugi', 'unitig_748.g7963' => 'ugi', 'unitig_8.g3479' => 'ugi', 'unitig_8.g4111' => 'ugi', 'unitig_8.g4112' => 'ugi', 'unitig_8.g4224' => 'ugi', 'unitig_8.g4273' => 'ugi', 'unitig_899.g15103' => 'ugi', 'vmacro07376' => 'vma', 'vmacro07377' => 'vma', 'vmacro07760' => 'vma', 'vmacro16488' => 'vma', 'vmacro16489' => 'vma', 'vmacro17619' => 'vma', 'vmacro17620' => 'vma', 'vmacro18143' => 'vma', 'VMungo0464G1171' => 'vmu', 'VMungo0695G0001' => 'vmu', 'VMungo1309G0947' => 'vmu', 'VMungo1309G3138' => 'vmu', 'VMungo1383G1800' => 'vmu', 'VMungo1383G1838' => 'vmu', 'VMungo1383G3000' => 'vmu', 'Zm00001eb008650' => 'zma', 'Zm00001eb118130' => 'zma', 'Zm00001eb214660' => 'zma', 'Zm00001eb307280' => 'zma' ) $gf_id = 'HOM05D000874' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000874' ) $data_identifier = 'HOM05D000874' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 10, 'aar' => (int) 3, 'aag' => (int) 2, 'ach' => (int) 17, 'amhyb' => (int) 3, 'aly' => (int) 4, 'aox' => (int) 3, 'arhy' => (int) 7, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 15, 'bol' => (int) 5, 'bra' => (int) 5, 'can' => (int) 6, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 5, 'car' => (int) 3, 'cbr' => (int) 6, 'ccan' => (int) 16, 'cde' => (int) 5, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 9, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 5, 'dzi' => (int) 4, 'eca' => (int) 7, 'bvu' => (int) 5, 'egr' => (int) 5, 'fan' => (int) 25, 'fve' => (int) 9, 'gma' => (int) 8, 'ghi' => (int) 8, 'gra' => (int) 4, 'vvi' => (int) 4, 'han' => (int) 15, 'cav' => (int) 5, 'hma' => (int) 2, 'vpl' => (int) 6, 'sun' => (int) 5, 'lal' => (int) 6, 'lja' => (int) 6, 'lonja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 3, 'mco' => (int) 2, 'mdo' => (int) 8, 'mtr' => (int) 12, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 10, 'nnu' => (int) 9, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 6, 'ppa' => (int) 5, 'ppe' => (int) 5, 'psa' => (int) 9, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 6, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 3, 'sed' => (int) 8, 'sgi' => (int) 7, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 17, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 9, 'ugi' => (int) 31, 'vma' => (int) 8, 'vmu' => (int) 7, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb307280' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1